GC3F-CG-6139 (#5904)

Run Info

Start / End: -

Submitter Info

Lab: Ting, Nelson (UOREGON) Lab

Service

Service Requested
MiSeq v3
Read Type
Paired-End
Length Preferred
300

Details

Fragment Size From
~125
Fragment Size To
~300
Volume Submitted (µL)
500 uL
Measured Concentration
1.55
Method for Measuring Concentration
Fluorometer
Primer Kit
Custom
Concentration units
ng/µL
Multiplexed?
YES: Index reads are required (and demultiplexing IS requested)
Indexing scheme
Dual indexed (both i5 and i7 sides)
Custom primers requested?
No

Sample

Expected Date Sample will be Submitted

Payment

Comments
Custom run request: extend forward read from 300 to 375 forward read cycles, to adapt run to follow Barbian et al. excerpted below:

"All STR amplicons were sequenced in one direction using v2 chemistry (500 cycle kits) without fragmentation. This increased the length of the STR loci that could be analyzed to ~400 bp (instead of 2 x 250 paired-end reads). Although 500 cycles are the theoretical maximum of the sequencing kit, we observed diminishing data quality between 350 and 400 cycles. We thus selected 375 forward and 51 reverse read cycles, using only the forward reads for analysis to preclude alignment artifacts of pairing reads in the repeat regions (the reverse reads were only used for MiSeq quality control)."

iLab

iLab Service ID
iLab State
completed
Lab
Ting, Nelson (UOREGON) Lab

Admin

Date Sample Received